Huilin's Notebook
Bioinformarics
1.
Binder design
1.1.
preprocessing
1.2.
design
1.3.
pae_interaction score
1.4.
backbones filtering
1.5.
results
2.
Computational Protein
2.1.
Protein
2.2.
Protein Representation
2.3.
Environment Setup
2.4.
databases: PDB, Swiss-Prot, OMG_Prot50
2.5.
BLAST usage: BLASTp makeblastdb
2.6.
protein strcuture measurement
2.7.
fasta to mutated fasta .py
2.8.
sequence similarity .py
2.9.
foldseek usage
2.10.
MMseqs2 usage
2.11.
localcolabfold usage
2.12.
Encoding Sequences into Integer Representations Using K-mer Binary Mapping
2.13.
parasail in C usage
2.14.
Biopython
2.15.
unipressed.UniprotkbClient
2.16.
daliLite V5 usage
3.
PyMol
MLDL
4.
A Deep learning Neural Network from the scratch via Numpy/Pandas
Statistics
5.
Paird t-Test
6.
Bayesian inference
Random
7.
Shell Bash Slurm Command
8.
LaTex
9.
Python
10.
Visualization
10.1.
Drawing a plane perpendicular to a given line
10.2.
Plotly color
10.3.
Movies
11.
Hugo: Book theme
12.
Hugo
13.
resources
Contact
World
Light
Rust
Coal
Navy
Ayu
Huilin's Book
Visualization