- Proteins are polymers -- loong and chain-like moleculars.
- mRNA encodes a polypeptide. (mRNA codes fro a polypeptide)
- A linear chain of amino acid residues is called a polypeptide.
- Short polypeptides, containing less than 20–30 residues, are rarely considered to be proteins and are commonly called peptides.
- The amino acids in a polypeptide chain are linked by peptide bonds between amino (-NH2) and carboxyl group (-COOH).
- An individual amino acid in a chain is called a residue.
- A polypeptide chain ends with a free amino group, known as the N-terminus or amino terminus (positively charged), and a free carboxyl group, known as the C-terminus or carboxy terminus(negatively charged). polarity
- All proteins are made of 21 amino acids.
These amino acids can be divided into three groups based on their properties determnined by their side chains:
- Hydrophobic: carbon-rich side chains which don't interact well with water.
- Hydrophilic/Polar: iteract well with water.
- Charged: iteract with oppositely charded amino acids or other molecules.
- A protein can be composed of one or more polypeptides.
- beta-strand vs beta-sheet
- Primary structure
Linear sequence of amino acids encoded by DNA. Amino acids are joined by peptide bonds, happending between -COOH and -NH2. A water H2O molecule is released each time a bond is formed. The linked series of carbon, nitrogen and oxygen atoms make up the protein backbone
- Secondary structure
Alpha helix and Beta sheet
- Tertiary structure
3D shape of the protein
- Quaternary structure
Two or more polypeptide chains come together to form one fucntional molecule wih several subunits.
reference
- Molecular biology (Molecular Biology 5th (Fifth) Edition, Robert Weavers, amazon)
- https://en.wikipedia.org/wiki/Protein
- https://pdb101.rcsb.org/learn/videos