cmd.wizard("mutagenesis")
cmd.fetch("target.pdb")
cmd.get_wizard().set_mode("LEU")
cmd.get_wizard().do_select("chain A and resid 22")
cmd.get_wizard().apply()
cmd.save("mutated_target.pdb")
save as .pdb file.
File > Export Structure > Export Molecule > Save > change "save as type"
select and color
select AFlow2, AF-A0A482RRZ8-F1-model_v6_aligned_CA and resi 57+147+148
color 0xFFDB13, AFlow2
diagram
Space-filling diagram:
shows all atoms
Ribbon/Cartoon diagram:
shows the protein backbone and highlights the alpha helices.
Surface diagram:
shows areas that are accessible to water molecules.
