remove HETATOM from pdb format
from Bio import PDB
pdb = PDB.PDBParser().get_structure("2gq1", "FBP/2gq1.pdb")
class ResSelect(PDB.Select):
def accept_residue(self, res):
if res.id[0] != " ": #>= start_res and res.id[1] <= end_res and res.parent.id == chain_id:
return False
else:
return True
pdb_io = PDB.PDBIO()
pdb_io.set_structure(pdb)
pdb_io.save("FBP/2gq1_no_HETATOM.pdb", ResSelect())