read data
read id
and seq
from .fasta
#
from Bio import SeqIO
with open('fa.fasta') as fasta_file:
identifiers, seq = [], []
for seq_record in SeqIO.parse(fasta_file, 'fasta'):
identifiers.append(seq_record.id)
seq.append("".join(seq_record.seq))
fa_df = pd.DataFrame()
fa_df["seq"] = seq
fa_df["id"] = identifiers
pandas read #
pd.read_csv('result.csv', header=None, index_col=0)
# index_col=False